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Publications by SCSB Faculty

Last Update: December, 2017

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  • 2011 Publications

    Stoylov, SP; Stoilova-McPhie, S.; "Electro-optic properties of organic nanotubes", Advances Colloid and Interface Sci.(review), 166(1-2): 24-35 (2011).

    Ungethüm, L; Kenis, H; Nicolaes, G; Autin, L; Stoilova-McPhie, S; Reutelingsperger, C; "Engineered annexin A5 variants with impaired cell entry for molecular imaging of apoptosis using pretargeting strategies", J. Biol. Chem. 21:1903-10 (2011).

    Lowman, DW; West, LJ; Bearden, DW; Wempe, MF; Power, TD; Ensley, HE; Haynes, K; Williams, DL; Kruppa, MD; "New Insights into the Structure of (1→3,1→6)-β-D-Glucan Side Chains in the Candida glabrata Cell Wall.", PLoS ONE, 6, e27614 (2011).

    Sarmiento, J; Shumate, C; Suetomi, K; Ravindran, A; Villegas, L; Rajarathnam, K; Navarro, J; "Diverging mechanisms of activation of chemokine receptors revealed by novel chemokine agonists.", PloS one, 6, e27967 (2011).

    Tsetsarkin, KA; Weaver, SC; "Sequential adaptive mutations enhance efficient vector switching by Chikungunya virus and its epidemic emergence.", PLoS pathogens, 7, e1002412 (2011).

    Deardorff, ER; Estrada-Franco, JG; Freier, JE; Navarro-Lopez, R; Travassos Da Rosa, A; Tesh, RB; Weaver, SC; "Candidate vectors and rodent hosts of Venezuelan equine encephalitis virus, Chiapas, 2006-2007.", The American journal of tropical medicine and hygiene, 85, 1146-53 (2011).

    Thomas, S; Thirumalapura, NR; Crocquet-Valdes, PA; Luxon, BA; Walker, DH; "Structure-based vaccines provide protection in a mouse model of ehrlichiosis.", PloS one, 6, e27981 (2011).

    Oezguen, N; Mantha, AK; Izumi, T; Schein, CH; Mitra, S; Braun, W; "MD simulation and experimental evidence for Mg2+ binding at the B site in human AP endonuclease 1.", Bioinformation, 7, 184-98 (2011).

    Vainrub, A; Pettitt, BM; "Accurate prediction of binding thermodynamics for DNA on surfaces.", The journal of physical chemistry. B, 115, 13300-3 (2011).

    Tsetsarkin, KA; Chen, R; Sherman, MB; Weaver, SC; "Chikungunya Virus: Evolution and Genetic Determinants of Emergence.", Current opinion in virology, 1, 310-317 (2011).

    Ni, W; Hutagalung, AH; Li, S; Epstein, HF; "The myosin-binding UCS domain but not the Hsp90-binding TPR domain of the UNC-45 chaperone is essential for function in Caenorhabditis elegans.", Journal of cell science, 124, 3164-73 (2011).

    Szymanski, MR; Bujalowski, PJ; Jezewska, MJ; Gmyrek, AM; Bujalowski, W; "The N-terminal domain of the Escherichia coli PriA helicase contains both the DNA- and nucleotide-binding sites. Energetics of domain--DNA interactions and allosteric effect of the nucleotide cofactors.", Biochemistry, 50, 9167-83 (2011).

    Stieren, ES; El Ayadi, A; Xiao, Y; Siller, E; Landsverk, ML; Oberhauser, AF; Barral, JM; Boehning, D; "Ubiquilin-1 is a molecular chaperone for the amyloid precursor protein.", The Journal of biological chemistry, 286, 35689-98 (2011).

    Plante, K; Wang, E; Partidos, CD; Weger, J; Gorchakov, R; Tsetsarkin, K; Borland, EM; Powers, AM; Seymour, R; Stinchcomb, DT; Osorio, JE; Frolov, I; Weaver, SC; "Novel chikungunya vaccine candidate with an IRES-based attenuation and host range alteration mechanism.", PLoS pathogens, 7, e1002142 (2011).

    Guo, W; Chen, D; Fan, Z; Epstein, HF; "Differential turnover of myosin chaperone UNC-45A isoforms increases in metastatic human breast cancer.", Journal of molecular biology, 412, 365-78 (2011).

    Soloff, MS; Jeng, YJ; Izban, MG; Sinha, M; Luxon, BA; Stamnes, SJ; England, SK; "Effects of progesterone treatment on expression of genes involved in uterine quiescence.", Reproductive sciences (Thousand Oaks, Calif.), 18, 781-97 (2011).

    Li, J; Lee, JC; "Modulation of allosteric behavior through adjustment of the differential stability of the two interacting domains in E. coli cAMP receptor protein.", Biophysical chemistry, 159, 210-6 (2011).

    Aguilar, PV; Estrada-Franco, JG; Navarro-Lopez, R; Ferro, C; Haddow, AD; Weaver, SC; "Endemic Venezuelan equine encephalitis in the Americas: hidden under the dengue umbrella.", Future virology, 6, 721-740 (2011).

    Choi, K; Chen, J; Mitra, S; Sarna, SK; "Impaired integrity of DNA after recovery from inflammation causes persistent dysfunction of colonic smooth muscle.", Gastroenterology, 141, 1293-301, 1301.e1-3 (2011).

    Anderson, JF; Siller, E; Barral, JM; "The neurodegenerative-disease-related protein sacsin is a molecular chaperone.", Journal of molecular biology, 411, 870-80 (2011).

    Szymanski, MR; Jezewska, MJ; Bujalowski, PJ; Bussetta, C; Ye, M; Choi, KH; Bujalowski, W; "Full-length Dengue virus RNA-dependent RNA polymerase-RNA/DNA complexes: stoichiometries, intrinsic affinities, cooperativities, base, and conformational specificities.", The Journal of biological chemistry, 286, 33095-108 (2011).

    Forrester, NL; Guerbois, M; Adams, AP; Liang, X; Weaver, SC; "Analysis of intrahost variation in Venezuelan equine encephalitis virus reveals repeated deletions in the 6-kilodalton protein gene.", Journal of virology, 85, 8709-17 (2011).

    Wang, E; Kim, DY; Weaver, SC; Frolov, I; "Chimeric Chikungunya viruses are nonpathogenic in highly sensitive mouse models but efficiently induce a protective immune response.", Journal of virology, 85, 9249-52 (2011).

    Malmstrom, RD; Watowich, SJ; "Using free energy of binding calculations to improve the accuracy of virtual screening predictions.", Journal of chemical information and modeling, 51, 1648-55 (2011).

    Szymanski, MR; Jezewska, MJ; Bujalowski, W; "Binding of two PriA-PriB complexes to the primosome assembly site initiates primosome formation.", Journal of molecular biology, 411, 123-42 (2011).

    Darwin, JR; Kenney, JL; Weaver, SC; "Transmission potential of two chimeric Chikungunya vaccine candidates in the urban mosquito vectors, Aedes aegypti and Ae. albopictus.", The American journal of tropical medicine and hygiene, 84, 1012-5 (2011).

    Jezewska, MJ; Szymanski, MR; Bujalowski, W; "Kinetic mechanism of the ssDNA recognition by the polymerase X from African Swine Fever Virus. Dynamics and energetics of intermediate formations.", Biophysical chemistry, 158, 9-20 (2011).

    Jezewska, MJ; Szymanski, MR; Bujalowski, W; "Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite.", Biophysical chemistry, 158, 26-37 (2011).

    Zandarashvili, L; Li, DW; Wang, T; Brüschweiler, R; Iwahara, J; "Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation.", Journal of the American Chemical Society, 133, 9192-5 (2011).

    Tsetsarkin, KA; Chen, R; Leal, G; Forrester, N; Higgs, S; Huang, J; Weaver, SC; "Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes.", Proceedings of the National Academy of Sciences of the United States of America, 108, 7872-7 (2011).

    Ivanciuc, O; Gendel, SM; Power, TD; Schein, CH; Braun, W; "AllerML: markup language for allergens.", Regulatory toxicology and pharmacology : RTP, 60, 151-60 (2011).

    Jezewska, MJ; Szymanski, MR; Bujalowski, W; "The primary DNA-binding subsite of the rat pol β. Energetics of interactions of the 8-kDa domain of the enzyme with the ssDNA.", Biophysical chemistry, 156, 115-27 (2011).

    Kenney, JL; Volk, SM; Pandya, J; Wang, E; Liang, X; Weaver, SC; "Stability of RNA virus attenuation approaches.", Vaccine, 29, 2230-4 (2011).

    Lee, JC; Herman, P; "Structural and functional energetic linkages in allosteric regulation of muscle pyruvate kinase.", Methods in enzymology, 488, 185-217 (2011).

    Bujalowski, W; Jezewska, MJ; "Macromolecular competition titration method accessing thermodynamics of the unmodified macromolecule-ligand interactions through spectroscopic titrations of fluorescent analogs.", Methods in enzymology, 488, 17-57 (2011).

    Esadze, A; Li, DW; Wang, T; Brüschweiler, R; Iwahara, J; "Dynamics of lysine side-chain amino groups in a protein studied by heteronuclear 1H-15N NMR spectroscopy.", Journal of the American Chemical Society, 133, 909-19 (2011).

    Tomlinson, SM; Watowich, SJ; "Anthracene-based inhibitors of dengue virus NS2B-NS3 protease.", Antiviral research, 89, 127-35 (2011).

    Tsalkova, T; Gribenko, AV; Cheng, X; "Exchange protein directly activated by cyclic AMP isoform 2 is not a direct target of sulfonylurea drugs.", Assay and drug development technologies, 9, 88-91 (2011).

    Anderson, JF; Siller, E; Barral, JM; "Disorders of protein biogenesis and stability.", Protein and peptide letters, 18, 110-21 (2011).