SCSB Publications 2011 Selected Publications by SCSB FacultyLast Updated January 2020 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 2003 2002 2011Stoylov, SP; Stoilova-McPhie, S.; "Electro-optic properties of organic nanotubes", Advances Colloid and Interface Sci.(review), 166(1-2): 24-35 (2011).Ungethüm, L; Kenis, H; Nicolaes, G; Autin, L; Stoilova-McPhie, S; Reutelingsperger, C; "Engineered annexin A5 variants with impaired cell entry for molecular imaging of apoptosis using pretargeting strategies", J. Biol. Chem. 21:1903-10 (2011).Lowman, DW; West, LJ; Bearden, DW; Wempe, MF; Power, TD; Ensley, HE; Haynes, K; Williams, DL; Kruppa, MD; "New Insights into the Structure of (1→3,1→6)-β-D-Glucan Side Chains in the Candida glabrata Cell Wall.", PLoS ONE, 6, e27614 (2011).Sarmiento, J; Shumate, C; Suetomi, K; Ravindran, A; Villegas, L; Rajarathnam, K; Navarro, J; "Diverging mechanisms of activation of chemokine receptors revealed by novel chemokine agonists.", PloS one, 6, e27967 (2011).Tsetsarkin, KA; Weaver, SC; "Sequential adaptive mutations enhance efficient vector switching by Chikungunya virus and its epidemic emergence.", PLoS pathogens, 7, e1002412 (2011).Deardorff, ER; Estrada-Franco, JG; Freier, JE; Navarro-Lopez, R; Travassos Da Rosa, A; Tesh, RB; Weaver, SC; "Candidate vectors and rodent hosts of Venezuelan equine encephalitis virus, Chiapas, 2006-2007.", The American journal of tropical medicine and hygiene, 85, 1146-53 (2011).Thomas, S; Thirumalapura, NR; Crocquet-Valdes, PA; Luxon, BA; Walker, DH; "Structure-based vaccines provide protection in a mouse model of ehrlichiosis.", PloS one, 6, e27981 (2011).Oezguen, N; Mantha, AK; Izumi, T; Schein, CH; Mitra, S; Braun, W; "MD simulation and experimental evidence for Mg2+ binding at the B site in human AP endonuclease 1.", Bioinformation, 7, 184-98 (2011).Vainrub, A; Pettitt, BM; "Accurate prediction of binding thermodynamics for DNA on surfaces.", The journal of physical chemistry. B, 115, 13300-3 (2011).Tsetsarkin, KA; Chen, R; Sherman, MB; Weaver, SC; "Chikungunya Virus: Evolution and Genetic Determinants of Emergence.", Current opinion in virology, 1, 310-317 (2011).Ni, W; Hutagalung, AH; Li, S; Epstein, HF; "The myosin-binding UCS domain but not the Hsp90-binding TPR domain of the UNC-45 chaperone is essential for function in Caenorhabditis elegans.", Journal of cell science, 124, 3164-73 (2011).Szymanski, MR; Bujalowski, PJ; Jezewska, MJ; Gmyrek, AM; Bujalowski, W; "The N-terminal domain of the Escherichia coli PriA helicase contains both the DNA- and nucleotide-binding sites. Energetics of domain--DNA interactions and allosteric effect of the nucleotide cofactors.", Biochemistry, 50, 9167-83 (2011).Stieren, ES; El Ayadi, A; Xiao, Y; Siller, E; Landsverk, ML; Oberhauser, AF; Barral, JM; Boehning, D; "Ubiquilin-1 is a molecular chaperone for the amyloid precursor protein.", The Journal of biological chemistry, 286, 35689-98 (2011).Plante, K; Wang, E; Partidos, CD; Weger, J; Gorchakov, R; Tsetsarkin, K; Borland, EM; Powers, AM; Seymour, R; Stinchcomb, DT; Osorio, JE; Frolov, I; Weaver, SC; "Novel chikungunya vaccine candidate with an IRES-based attenuation and host range alteration mechanism.", PLoS pathogens, 7, e1002142 (2011).Guo, W; Chen, D; Fan, Z; Epstein, HF; "Differential turnover of myosin chaperone UNC-45A isoforms increases in metastatic human breast cancer.", Journal of molecular biology, 412, 365-78 (2011).Soloff, MS; Jeng, YJ; Izban, MG; Sinha, M; Luxon, BA; Stamnes, SJ; England, SK; "Effects of progesterone treatment on expression of genes involved in uterine quiescence.", Reproductive sciences (Thousand Oaks, Calif.), 18, 781-97 (2011).Li, J; Lee, JC; "Modulation of allosteric behavior through adjustment of the differential stability of the two interacting domains in E. coli cAMP receptor protein.", Biophysical chemistry, 159, 210-6 (2011).Aguilar, PV; Estrada-Franco, JG; Navarro-Lopez, R; Ferro, C; Haddow, AD; Weaver, SC; "Endemic Venezuelan equine encephalitis in the Americas: hidden under the dengue umbrella.", Future virology, 6, 721-740 (2011).Choi, K; Chen, J; Mitra, S; Sarna, SK; "Impaired integrity of DNA after recovery from inflammation causes persistent dysfunction of colonic smooth muscle.", Gastroenterology, 141, 1293-301, 1301.e1-3 (2011).Anderson, JF; Siller, E; Barral, JM; "The neurodegenerative-disease-related protein sacsin is a molecular chaperone.", Journal of molecular biology, 411, 870-80 (2011).Szymanski, MR; Jezewska, MJ; Bujalowski, PJ; Bussetta, C; Ye, M; Choi, KH; Bujalowski, W; "Full-length Dengue virus RNA-dependent RNA polymerase-RNA/DNA complexes: stoichiometries, intrinsic affinities, cooperativities, base, and conformational specificities.", The Journal of biological chemistry, 286, 33095-108 (2011).Forrester, NL; Guerbois, M; Adams, AP; Liang, X; Weaver, SC; "Analysis of intrahost variation in Venezuelan equine encephalitis virus reveals repeated deletions in the 6-kilodalton protein gene.", Journal of virology, 85, 8709-17 (2011).Wang, E; Kim, DY; Weaver, SC; Frolov, I; "Chimeric Chikungunya viruses are nonpathogenic in highly sensitive mouse models but efficiently induce a protective immune response.", Journal of virology, 85, 9249-52 (2011).Malmstrom, RD; Watowich, SJ; "Using free energy of binding calculations to improve the accuracy of virtual screening predictions.", Journal of chemical information and modeling, 51, 1648-55 (2011).Szymanski, MR; Jezewska, MJ; Bujalowski, W; "Binding of two PriA-PriB complexes to the primosome assembly site initiates primosome formation.", Journal of molecular biology, 411, 123-42 (2011).Darwin, JR; Kenney, JL; Weaver, SC; "Transmission potential of two chimeric Chikungunya vaccine candidates in the urban mosquito vectors, Aedes aegypti and Ae. albopictus.", The American journal of tropical medicine and hygiene, 84, 1012-5 (2011).Jezewska, MJ; Szymanski, MR; Bujalowski, W; "Kinetic mechanism of the ssDNA recognition by the polymerase X from African Swine Fever Virus. Dynamics and energetics of intermediate formations.", Biophysical chemistry, 158, 9-20 (2011).Jezewska, MJ; Szymanski, MR; Bujalowski, W; "Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite.", Biophysical chemistry, 158, 26-37 (2011).Zandarashvili, L; Li, DW; Wang, T; Brüschweiler, R; Iwahara, J; "Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation.", Journal of the American Chemical Society, 133, 9192-5 (2011).Tsetsarkin, KA; Chen, R; Leal, G; Forrester, N; Higgs, S; Huang, J; Weaver, SC; "Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes.", Proceedings of the National Academy of Sciences of the United States of America, 108, 7872-7 (2011).Ivanciuc, O; Gendel, SM; Power, TD; Schein, CH; Braun, W; "AllerML: markup language for allergens.", Regulatory toxicology and pharmacology : RTP, 60, 151-60 (2011).Jezewska, MJ; Szymanski, MR; Bujalowski, W; "The primary DNA-binding subsite of the rat pol β. Energetics of interactions of the 8-kDa domain of the enzyme with the ssDNA.", Biophysical chemistry, 156, 115-27 (2011).Kenney, JL; Volk, SM; Pandya, J; Wang, E; Liang, X; Weaver, SC; "Stability of RNA virus attenuation approaches.", Vaccine, 29, 2230-4 (2011).Lee, JC; Herman, P; "Structural and functional energetic linkages in allosteric regulation of muscle pyruvate kinase.", Methods in enzymology, 488, 185-217 (2011).Bujalowski, W; Jezewska, MJ; "Macromolecular competition titration method accessing thermodynamics of the unmodified macromolecule-ligand interactions through spectroscopic titrations of fluorescent analogs.", Methods in enzymology, 488, 17-57 (2011).Esadze, A; Li, DW; Wang, T; Brüschweiler, R; Iwahara, J; "Dynamics of lysine side-chain amino groups in a protein studied by heteronuclear 1H-15N NMR spectroscopy.", Journal of the American Chemical Society, 133, 909-19 (2011).Tomlinson, SM; Watowich, SJ; "Anthracene-based inhibitors of dengue virus NS2B-NS3 protease.", Antiviral research, 89, 127-35 (2011).Tsalkova, T; Gribenko, AV; Cheng, X; "Exchange protein directly activated by cyclic AMP isoform 2 is not a direct target of sulfonylurea drugs.", Assay and drug development technologies, 9, 88-91 (2011).Anderson, JF; Siller, E; Barral, JM; "Disorders of protein biogenesis and stability.", Protein and peptide letters, 18, 110-21 (2011).