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Publications by SCSB Faculty

Last Update: 2016

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  • 2005 Publications

    Sutton RB, Vishnivetskiy SA, Robert J, Hanson SM, Raman D, Knox BE, Kono M, Navarro J, Gurevich VV., Crystal structure of cone arrestin at 2.3A: evolution of receptor specificity., J Mol Biol. 2005 Dec 16;354(5):1069-80. {PM}

    Schultz DA, Friedman AM, White MA, Fox RO., The crystal structure of the cis-proline to glycine variant (P114G) of ribonuclease A, Protein Sci. 2005 Nov; 14(11):2862-70. [Epub ahead of print; Sep 30] {PM}

    Bi-Hung Peng, Mark A. White, Gerald A. Campbell, Jebamony J. Robert, J. Ching Lee, Roger B. Sutton, Crystallization and preliminary X-ray diffraction of the ZO-binding domain of human occludin Acta Cryst. F 61, Page 369-371, Apr 2005. {PM}

    Czerwinski EW, Midoro-Horiuti T, White MA, Brooks EG, Goldblum RM., Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core. J. Biol. Chem 280, 5, 3740-6, 2005. {PM}

    Mei FC, Cheng X. Interplay between exchange protein directly activated by cAMP (Epac) and microtubule cytoskeleton. Mol Biosyst. 2005 Oct;1(4):325-31.

    Peng BH, White MA, Campbell GA, Robert JJ, Lee JC, Sutton RB. Crystallization and preliminary X-ray diffraction of the ZO-binding domain of human occludin. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Apr 1;61(Pt 4):369-71.

    Sutton RB, Vishnivetskiy SA, Robert J, Hanson SM, Raman D, Knox BE, Kono M, Navarro J, Gurevich VV. Crystal structure of cone arrestin at 2.3A: evolution of receptor specificity. J Mol Biol. 2005 Dec 16;354(5):1069-80.

    Lipniacki T, Paszek P, Brasier AR, Luxon BA, Kimmel M. Stochastic regulation in early immune response. Biophys J. 2006 Feb 1;90(3):725-42. Epub 2005 Nov 11.

    Milliano MT, Luxon BA. Rat hepatic stellate cells become retinoid unresponsive during activation. Hepatol Res. 2005 Nov;33(3):225-33.

    Schein CH, Ivanciuc O, Braun W. Common physical-chemical properties correlate with similar structure of the IgE epitopes of peanut allergens. J Agric Food Chem. 2005 Nov 2;53(22):8752-9.

    Galletto R, Jezewska MJ, Maillard R, Bujalowski W. The nucleotide-binding site of the Escherichia coli DnaC protein: molecular topography of DnaC protein-nucleotide cofactor complexes. Cell Biochem Biophys. 2005;43(3):331-53.

    Auton M, Bolen DW. Predicting the energetics of osmolyte-induced protein folding/unfolding. Proc Natl Acad Sci U S A. 2005 Oct 18;102(42):15065-8.

    A Stemp MJ, Guha S, Hartl FU, Barral JM. Efficient production of native actin upon translation in a bacterial lysate supplemented with the eukaryotic chaperonin TRiC. Biol Chem. 2005 Aug;386(8):753-7.

    Schultz DA, Friedman AM, White MA, Fox RO. The crystal structure of the cis-proline to glycine variant (P114G) of ribonuclease A. Protein Sci. 2005 Nov;14(11):2862-70.

    Rajagopalan L, Rosgen J, Bolen DW, Rajarathnam K. Novel use of an osmolyte to dissect multiple thermodynamic linkages in a chemokine ligand-receptor system. Biochemistry. 2005 Oct 4;44(39):12932-9.

    Chang HC, Kaiser CM, Hartl FU, Barral JM. De novo folding of GFP fusion proteins: high efficiency in eukaryotes but not in bacteria. J Mol Biol. 2005 Oct 21;353(2):397-409.

    Chen AL, Soman KV, Rychahou PG, Luxon BA, Evers BM. Proteomic analysis of colonic myofibroblasts and effect on colon cancer cell proliferation. Surgery. 2005 Aug;138(2):382-90.

    Landsverk ML, Epstein HF. Genetic analysis of myosin II assembly and organization in model organisms. Cell Mol Life Sci. 2005 Oct;62(19-20):2270-82. Review.

    Tavassoli M, Guelen L, Luxon BA, Gaken J. Apoptin: Specific killer of tumor cells? Apoptosis. 2005 Aug;10(4):717-724.

    Kang J, Lee MS, Gorenstein DG. Quantitative analysis of chemiluminescence signals using a cooled charge-coupled device camera. Anal Biochem. 2005 Oct 1;345(1):66-71.

    Rosgen J, Pettitt BM, Bolen DW. Protein folding, stability, and solvation structure in osmolyte solutions. Biophys J. 2005 Nov;89(5):2988-97.

    Sheth PR, Watowich SJ. Oligomerization-induced differential dephosphorylation of c-Met receptor tyrosine kinase. Biochemistry. 2005 Aug 23;44(33):10984-93.

    Somasunderam A, Ferguson MR, Rojo DR, Thiviyanathan V, Li X, O'Brien WA, Gorenstein DG. Combinatorial selection, inhibition, and antiviral activity of DNA thioaptamers targeting the RNase H domain of HIV-1 reverse transcriptase. Biochemistry. 2005 Aug 2;44(30):10388-95.

    Altenberg GA. The multidrug resistance protein P-glycoprotein and the regulation of chloride channels. Leuk Res. 2005 Sep;29(9):983-4. No abstract available.

    Chen Y, Deng Y, Bao X, Reuss L, Altenberg GA. Mechanism of the defect in gap-junctional communication by expression of a connexin 26 mutant associated with dominant deafness. FASEB J. 2005 Sep;19(11):1516-8. Epub 2005 Jul 11.

    Kang J, Lee MS, Gorenstein DG. The enhancement of PCR amplification of a random sequence DNA library by DMSO and betaine: application to in vitro combinatorial selection of aptamers. J Biochem Biophys Methods. 2005 Aug 31;64(2):147-51.

    Lau DT, Luxon BA, Xiao SY, Beard MR, Lemon SM. Intrahepatic gene expression profiles and alpha-smooth muscle actin patterns in hepatitis C virus induced fibrosis. Hepatology. 2005 Aug;42(2):273-81.

    Cheng X. Understanding signal transduction through functional proteomics. Expert Rev Proteomics. 2005 Jan;2(1):103-16. Review.

    Das S, Sierra JC, Soman KV, Suarez G, Mohammad AA, Dang TA, Luxon BA, Reyes VE. Differential protein expression profiles of gastric epithelial cells following Helicobacter pylori infection using ProteinChips. J Proteome Res. 2005 May-Jun;4(3):920-30.

    Young T, Mei F, Liu J, Bast RC Jr, Kurosky A, Cheng X. Proteomics analysis of H-RAS-mediated oncogenic transformation in a genetically defined human ovarian cancer model. Oncogene. 2005 Sep 8;24(40):6174-84.

    Vertrees J, Barritt P, Whitten S, Hilser VJ. COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures. Bioinformatics. 2005 Aug 1;21(15):3318-9.

    Lee HM, Greeley GH, Herndon DN, Sinha M, Luxon BA, Englander EW. A rat model of smoke inhalation injury: influence of combustion smoke on gene expression in the brain. Toxicol Appl Pharmacol. 2005 Nov 1;208(3):255-65.

    Braun W, Walter U, Holbein R, Thull R. [Electrochemical properties of biocompatible material hardness modifications on titanium and steel under mechanical loads] Biomed Tech (Berl). 2005 Apr;50(4):100-6. German.

    Kumar R, Thompson EB. Gene regulation by the glucocorticoid receptor: structure:function relationship. J Steroid Biochem Mol Biol. 2005 Apr;94(5):383-94. Review.

    Galletto R, Jezewska MJ, Bujalowski W. Kinetics of allosteric conformational transition of a macromolecule prior to ligand binding: analysis of stopped-flow kinetic experiments. Cell Biochem Biophys. 2005;42(2):121-44 .

    Schein CH, Zhou B, Braun W. Stereophysicochemical variability plots highlight conserved antigenic areas in Flaviviruses. Virol J. 2005 Apr 21;2:40.

    von Messling V, Oezguen N, Zheng Q, Vongpunsawad S, Braun W, Cattaneo R. Nearby clusters of hemagglutinin residues sustain SLAM-dependent canine distemper virus entry in peripheral blood mononuclear cells. J Virol. 2005 May;79(9):5857-62.

    Miller AL, Webb MS, Copik AJ, Wang Y, Johnson BH, Kumar R, Thompson EB. p38 Mitogen-activated protein kinase (MAPK) is a key mediator in glucocorticoid-induced apoptosis of lymphoid cells: correlation between p38 MAPK activation and site-specific phosphorylation of the human glucocorticoid receptor at serine 211. Mol Endocrinol. 2005 Jun;19(6):1569-83.

    Whitten ST, Garcia-Moreno E B, Hilser VJ. Local conformational fluctuations can modulate the coupling between proton binding and global structural transitions in proteins. Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4282-7.

    Li ZY, Mao H, Kallick DA, Gorenstein DG. The effects of thiophosphate substitutions on native siRNA gene silencing. Biochem Biophys Res Commun. 2005 Apr 15;329(3):1026-30.

    Kumar R, Serrette JM, Thompson EB. Osmolyte-induced folding enhances tryptic enzyme activity. Arch Biochem Biophys. 2005 Apr 1;436(1):78-82.

    Jezewska MJ, Lucius AL, Bujalowski W. Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 2. Base specificity, nucleotide structure, magnesium, and salt effect on the cooperative binding of the cofactors. Biochemistry. 2005 Mar 15;44(10):3877-90.

    Jezewska MJ, Lucius AL, Bujalowski W. Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 1. Direct evidence of cooperative interactions between the nucleotide-binding sites of a hexameric helicase. Biochemistry. 2005 Mar 15;44(10):3865-76.

    Zhang L, Cui R, Cheng X, Du J. Antiapoptotic effect of serum and glucocorticoid-inducible protein kinase is mediated by novel mechanism activating I{kappa}B kinase. Cancer Res. 2005 Jan 15;65(2):457-64.

    Ilies MA, Johnson BH, Makori F, Miller A, Seitz WA, Thompson EB, Balaban AT. Pyridinium cationic lipids in gene delivery: an in vitro and in vivo comparison of transfection efficiency versus a tetraalkylammonium congener. Arch Biochem Biophys. 2005 Mar 1;435(1):217-26.

    Nesic-Taylor O, Cittelly D, Ye Z, Xu GY, Unabia G, Lee JC, Svrakic NM, Liu XH, Youle RJ, Wood TG, McAdoo D, Westlund KN, Hulsebosch CE, Perez-Polo JR. Exogenous Bcl-xL fusion protein spares neurons after spinal cord injury. J Neurosci Res. 2005 Mar 1;79(5):628-37.

    Galletto R, Jezewska MJ, Bujalowski W. Kinetic mechanism of rat polymerase beta-dsDNA interactions. Fluorescence stopped-flow analysis of the cooperative ligand binding to a two-site one-dimensional lattice. Biochemistry. 2005 Feb 1;44(4):1251-67.

    Thiviyanathan V, Somasunderam A, Volk DE, Gorenstein DG. 5-hydroxyuracil can form stable base pairs with all four bases in a DNA duplex. Chem Commun (Camb). 2005 Jan 21;(3):400-2.

    Chauhan M, Rajarathnam K, Yallampalli C. Role of the N-terminal domain of the calcitonin receptor-like receptor in ligand binding. Biochemistry. 2005 Jan 18;44(2):782-9.

    Cummins SF, Schein CH, Xu Y, Braun W, Nagle GT. Molluscan attractins, a family of water-borne protein pheromones with interspecific attractiveness. Peptides. 2005 Jan;26(1):121-9. Review.

    Bao X, Chen Y, Lee SH, Lee SC, Reuss L, Altenberg GA. Membrane transport proteins with complete replacement of transmembrane helices with polyalanine sequences remain functional.J Biol Chem. 2005 Mar 11;280(10):8647-50.

    Czerwinski EW, Midoro-Horiuti T, White MA, Brooks EG, Goldblum RM. Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core. J Biol Chem. 2005 Feb 4;280(5):3740-6.

    Schein CH, Zhou B, Oezguen N, Mathura VS, Braun W. Molego-based definition of the architecture and specificity of metal-binding sites. Proteins. 2005 Jan 1;58(1):200-10.

    Thiviyanathan V, Somasunderam A, Volk DE, Gorenstein DG. 5-hydroxyuracil can form stable base pairs with all four bases in a DNA duplex. Chem Commun (Camb). 2005 Jan 21;(3):400-2.