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Publications by SCSB Faculty

Last Update: December, 2017

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  • 2003 Publications

    Salomone OA, Basquiera AL, Sembaj A, Aguerri AM, Reyes ME, Omelianuk M, Fernandez RA, Enders J, Palma A, Barral JM, Madoery RJ. Trypanosoma cruzi in persons without serologic evidence of disease, Argentina. Emerg Infect Dis. 2003 Dec;9(12):1558-62.

    Ivanciuc O, Mathura V, Midoro-Horiuti T, Braun W, Goldblum RM, Schein CH. Detecting potential IgE-reactive sites on food proteins using a sequence and structure database, SDAP-food. J Agric Food Chem. 2003 Jul 30;51(16):4830-7.

    Landau EM, Pebay-Peyroula E, Neutze R. Structural and mechanistic insight from high resolution structures of archaeal rhodopsins. FEBS Lett. 2003 Nov 27;555(1):51-6. Review.

    Bao X, Altenberg GA, Reuss L. Mechanism of regulation of the gap junction protein connexin 43 by protein kinase C-mediated phosphorylation. Am J Physiol Cell Physiol. 2004 Mar;286(3):C647-54.

    Scott EE, He YA, Wester MR, White MA, Chin CC, Halpert JR, Johnson EF, Stout CD. An open conformation of mammalian cytochrome P450 2B4 at 1.6-A resolution. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13196-201.

    Midoro-Horiuti T, Mathura V, Schein CH, Braun W, Yu S, Watanabe M, Lee JC, Brooks EG, Goldblum RM. Major linear IgE epitopes of mountain cedar pollen allergen Jun a 1 map to the pectate lyase catalytic site. Mol Immunol. 2003 Dec;40(8):555-62.

    Young JC, Barral JM, Ulrich Hartl F. More than folding: localized functions of cytosolic chaperones. Trends Biochem Sci. 2003 Oct;28(10):541-7. Review.

    Jezewska MJ, Galletto R, Bujalowski W. Tertiary conformation of the template-primer and gapped DNA substrates in complexes with rat polymerase beta. Fluorescence energy transfer studies using the multiple donor-acceptor approach. Biochemistry. 2003 Oct 14;42(40):11864-78.

    Mathura VS, Soman KV, Varma TK, Braun W. A multimeric model for murine anti-apoptotic protein Bcl-2 and structural insights for its regulation by post-translational modification. J Mol Model. 2003 Oct;9(5):298-303. {PM}

    Peng BH, Lee JC, Campbell GA. In vitro protein complex formation with cytoskeleton-anchoring domain of occludin identified by limited proteolysis.J Biol Chem. 2003 Dec 5;278(49):49644-51.

    Marszalek PE, Oberhauser AF, Li H, Fernandez JM. The force-driven conformations of heparin studied with single molecule force microscopy. Biophys J. 2003 Oct;85(4):2696-704.

    Zhao Y, Liu D, Kaluarachchi WD, Bellamy HD, White MA, Fox RO. The crystal structure of Escherichia coli heat shock protein YedU reveals three potential catalytic active sites. Protein Sci. 2003 Oct;12(10):2303-11.

    Altenberg GA. The engine of ABC proteins. News Physiol Sci. 2003 Oct;18:191-5. Review. No abstract available.

    Zahringer M, Hesselmann V, Schulte O, Kamm KF, Braun W, Haupt G, Krug B, Lackner K. Reducing the radiation dose during excretory urography: flat-panel silicon x-ray detector versus computed radiography. AJR Am J Roentgenol. 2003 Oct;181(4):931-7.

    Paas Y, Cartaud J, Recouvreur M, Grailhe R, Dufresne V, Pebay-Peyroula E, Landau EM, Changeux JP. Electron microscopic evidence for nucleation and growth of 3D acetylcholine receptor microcrystals in structured lipid-detergent matrices. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11309-14.

    Copland JA, Luxon BA, Ajani L, Maity T, Campagnaro E, Guo H, LeGrand SN, Tamboli P, Wood CG. Genomic profiling identifies alterations in TGFbeta signaling through loss of TGFbeta receptor expression in human renal cell carcinogenesis and progression. Oncogene. 2003 Sep 11;22(39):8053-62.

    Webb MS, Miller AL, Johnson BH, Fofanov Y, Li T, Wood TG, Thompson EB. Gene networks in glucocorticoid-evoked apoptosis of leukemic cells. J Steroid Biochem Mol Biol. 2003 Jun;85(2-5):183-93.

    Furst J, Sutton RB, Chen J, Brunger AT, Grigorieff N. Electron cryomicroscopy structure of N-ethyl maleimide sensitive factor at 11 resolution. EMBO J. 2003 Sep 1;22(17):4365-74.

    Garimella R, Xu Y, Schein CH, Rajarathnam K, Nagle GT, Painter SD, Braun W. NMR solution structure of attractin, a water-borne protein pheromone from the mollusk Aplysia californica. Biochemistry. 2003 Aug 26;42(33):9970-9.

    Carrion-Vazquez M, Li H, Lu H, Marszalek PE, Oberhauser AF, Fernandez JM. The mechanical stability of ubiquitin is linkage dependent. Nat Struct Biol. 2003 Sep;10(9):738-43.

    Katona G, Andreasson U, Landau EM, Andreasson LE, Neutze R. Lipidic cubic phase crystal structure of the photosynthetic reaction centre from Rhodobacter sphaeroides at 2.35A resolution.J Mol Biol. 2003 Aug 15;331(3):681-92.

    Sanchez AM, Volk DE, Gorenstein DG, Lloyd RS. Initiation of repair of A/G mismatches is modulated by sequence context. DNA Repair (Amst). 2003 Aug 12;2(8):863-78.

    Luxon BA. Autoimmune hepatitis. Making sense of all those antibodies. Postgrad Med. 2003 Jul;114(1):79-82, 85-8. Review.

    Mathura VS, Schein CH, Braun W. Identifying property based sequence motifs in protein families and superfamilies: application to DNase-1 related endonucleases. Bioinformatics. 2003 Jul 22;19(11):1381-90.

    Russo AT, Rosgen J, Bolen DW. Osmolyte effects on kinetics of FKBP12 C22A folding coupled with prolyl isomerization. J Mol Biol. 2003 Jul 18;330(4):851-66. 12850152

    Zhang R, Epstein HF. Homodimerization through coiled-coil regions enhances activity of the myotonic dystrophy protein kinase. FEBS Lett. 2003 Jul 10;546(2-3):281-7.

    Milliano MT, Luxon BA. Initial signaling of the fibronectin receptor (alpha5beta1 integrin) in hepatic stellate cells is independent of tyrosine phosphorylation.J Hepatol. 2003 Jul;39(1):32-7. 12821041

    Lee SH, Altenberg GA. Expression of functional multidrug-resistance protein 1 in Saccharomyces cerevisiae: effects of N- and C-terminal affinity tags.Biochem Biophys Res Commun. 2003 Jul 4;306(3):644-9.

    Iyer D, Belaguli N, Fluck M, Rowan BG, Wei L, Weigel NL, Booth FW, Epstein HF, Schwartz RJ, Balasubramanyam A. Novel phosphorylation target in the serum response factor MADS box regulates alpha-actin transcription. Biochemistry. 2003 Jun 24;42(24):7477-86.

    Thompson EB, Johnson BH. Regulation of a distinctive set of genes in glucocorticoid-evoked apoptosis in CEM human lymphoid cells. Recent Prog Horm Res. 2003;58:175-97. Review.

    Copland JA, Davies PJ, Shipley GL, Wood CG, Luxon BA, Urban RJ. The use of DNA microarrays to assess clinical samples: the transition from bedside to bench to bedside. Recent Prog Horm Res. 2003;58:25-53. Review.

    Thompson EB, Kumar R. DNA binding of nuclear hormone receptors influences their structure and function. Biochem Biophys Res Commun. 2003 Jun 20;306(1):1-4. Review. No abstract available.

    Schenkl S, Portuondo E, Zgrablic G, Chergui M, Suske W, Dolder M, Landau EM, Haacke S. Compositional heterogeneity reflects partial dehydration in three-dimensional crystals of bacteriorhodopsin. J Mol Biol. 2003 Jun 13;329(4):711-9.

    Medh RD, Webb MS, Miller AL, Johnson BH, Fofanov Y, Li T, Wood TG, Luxon BA, Thompson EB. Gene expression profile of human lymphoid CEM cells sensitive and resistant to glucocorticoid-evoked apoptosis. Genomics. 2003 Jun;81(6):543-55.

    Shrestha NK, Mossad SB, Braun W. Pneumonitis associated with the use of mycophenolate mofetil. Transplantation. 2003 May 27;75(10):1762. No abstract available.

    Liu D, Midoro-Horiuti T, White MA, Brooks EG, Goldblum RM, Czerwinski EW. Crystallization and preliminary X-ray diffraction analysis of Jun a 1, the major allergen isolated from pollen of the mountain cedar Juniperus ashei. Acta Crystallogr D Biol Crystallogr. 2003 Jun;59(Pt 6):1052-4. Epub 2003 May 23.

    White MA, Liu D, Holbrook MR, Shope RE, Barrett AD, Fox RO. Crystallization and preliminary X-ray diffraction analysis of Langat virus envelope protein domain III. Acta Crystallogr D Biol Crystallogr. 2003 Jun;59(Pt 6):1049-51. Epub 2003 May 23.

    Jezewska MJ, Galletto R, Bujalowski W. Rat polymerase beta gapped DNA interactions: antagonistic effects of the 5' terminal PO4 - group and magnesium on the enzyme binding to the gapped DNAs with different ssDNA gaps. Cell Biochem Biophys. 2003;38(2):125-60.

    Galletto R, Jezewska MJ, Bujalowski W. Interactions of the Escherichia coli DnaB helicase hexamer with the replication factor the DnaC protein. Effect of nucleotide cofactors and the ssDNA on protein-protein interactions and the topology of the complex. J Mol Biol. 2003 Jun 6;329(3):441-65.

    Jezewska MJ, Galletto R, Bujalowski W. Rat polymerase beta binds double-stranded DNA using exclusively the 8-kDa domain. Stoichiometries, intrinsic affinities, and cooperativities. Biochemistry. 2003 May 20;42(19):5955-70.

    Qu Y, Bolen DW. Hydrogen exchange kinetics of RNase A and the urea:TMAO paradigm. Biochemistry. 2003 May 20;42(19):5837-49.

    Ferreon JC, Volk DE, Luxon BA, Gorenstein DG, Hilser VJ. Solution structure, dynamics, and thermodynamics of the native state ensemble of the Sem-5 C-terminal SH3 domain. Biochemistry. 2003 May 20;42(19):5582-91.

    Yang X, Li X, Prow TW, Reece LM, Bassett SE, Luxon BA, Herzog NK, Aronson J, Shope RE, Leary JF, Gorenstein DG. Immunofluorescence assay and flow-cytometry selection of bead-bound aptamers. Nucleic Acids Res. 2003 May 15;31(10):e54.

    Lin SH, Lee JC. Determinants of DNA bending in the DNA-cyclic AMP receptor protein complexes in Escherichia coli.Biochemistry. 2003 May 6;42(17):4809-18.

    Ferreon JC, Hilser VJ. Ligand-induced changes in dynamics in the RT loop of the C-terminal SH3 domain of Sem-5 indicate cooperative conformational coupling. Protein Sci. 2003 May;12(5):982-96.

    Hays JL, Watowich SJ. Oligomerization-induced modulation of TPR-MET tyrosine kinase activity. J Biol Chem. 2003 Jul 25;278(30):27456-63.

    Bujalowski W. Expanding the physiological role of the hexameric DnaB helicase. Trends Biochem Sci. 2003 Mar;28(3):116-8.

    Schulz PE, McIntosh AD, Kasten MR, Wieringa B, Epstein HF. A role for myotonic dystrophy protein kinase in synaptic plasticity. J Neurophysiol. 2003 Mar;89(3):1177-86.

    Schittko A, Braun W, Ruter A. [Experiences with the OrTra-prosthesis in primary prosthetic replacement of fractures of the humeral head--indication, technique and results] Zentralbl Chir. 2003 Jan;128(1):12-6. German.

    Ferreon JC, Hilser VJ. The effect of the polyproline II (PPII) conformation on the denatured state entropy. Protein Sci. 2003 Mar;12(3):447-57.

    Volk DE, Thiviyanathan V, Rice JS, Luxon BA, Shah JH, Yagi H, Sayer JM, Yeh HJ, Jerina DM, Gorenstein DG. Solution structure of a cis-opened (10R)-N6-deoxyadenosine adduct of (9S,10R)-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA duplex. Biochemistry. 2003 Feb 18;42(6):1410-20.

    Kaganer VM, Braun W, Jenichen B, Daweritz L, Ploog KH. Two-dimensional coarsening kinetics of reconstruction domains: GaAs(001)-beta(2 x 4).Phys Rev Lett. 2003 Jan 10;90(1)

    Chen R, Lee JC. Functional roles of loops 3 and 4 in the cyclic nucleotide binding domain of cyclic AMP receptor protein from Escherichia coli. J Biol Chem. 2003 Apr 11;278(15):13235-43.

    Ivanciuc O, Schein CH, Braun W. SDAP: database and computational tools for allergenic proteins. Nucleic Acids Res. 2003 Jan 1;31(1):359-62.

    Kumar R, Thompson EB. Transactivation functions of the N-terminal domains of nuclear hormone receptors: protein folding and coactivator interactions. Mol Endocrinol. 2003 Jan;17(1):1-10. Review.

    Yu S, Lee LL, Lee JC. Effects of metabolites on the structural dynamics of rabbit muscle pyruvate kinase. Biophys Chem. 2003 Jan 8;103(1):1-11.

    Thiviyanathan V, Somasunderam A, Hazra TK, Mitra S, Gorenstein DG. Solution structure of a DNA duplex containing 8-hydroxy-2'-deoxyguanosine opposite deoxyguanosine. J Mol Biol. 2003 Jan 17;325(3):433-42.

    Paredes A, Alwell-Warda K, Weaver SC, Chiu W, Watowich SJ. Structure of isolated nucleocapsids from venezuelan equine encephalitis virus and implications for assembly and disassembly of enveloped virus. J Virol. 2003 Jan;77(1):659-64.

    Lee SH, Altenberg GA. Transport of leukotriene C4 by a cysteine-less multidrug resistance protein 1 (MRP1). Biochem J. 2003 Feb 15;370(Pt 1):357-60.