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Publications by SCSB Faculty

Last Update: December, 2017

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  • 2002 Publications

    Volk DE, Yang X, Fennewald SM, King DJ, Bassett SE, Venkitachalam S, Herzog N, Luxon BA, Gorenstein DG. Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB. Bioorg Chem. 2002 Dec;30(6):396-419.

    Isada CM, Yen-Lieberman B, Lurain NS, Schilz R, Kohn D, Longworth DL, Taege AJ, Mossad SB, Maurer J, Flechner SM, Mawhorter SD, Braun W, Gordon SM, Schmitt SK, Goldman M, Long J, Haug M, Avery RK. Clinical characteristics of 13 solid organ transplant recipients with ganciclovir-resistant cytomegalovirus infection. Transpl Infect Dis. 2002 Dec;4(4):189-94.

    Qu Y, Bolen DW. Efficacy of macromolecular crowding in forcing proteins to fold. Biophys Chem. 2002 Dec 10;101-102:155-65.

    Lin SH, Lee JC. Linkage of multiequilibria in DNA recognition by the D53H Escherichia coli cAMP receptor protein. Biochemistry. 2002 Dec 17;41(50):14935-43.

    Li J, Cheng X, Lee JC. Structure and dynamics of the modular halves of Escherichia coli cyclic AMP receptor protein. Biochemistry. 2002 Dec 17;41(50):14771-8.

    Yang X, Bassett SE, Li X, Luxon BA, Herzog NK, Shope RE, Aronson J, Prow TW, Leary JF, Kirby R, Ellington AD, Gorenstein DG. Construction and selection of bead-bound combinatorial oligonucleoside phosphorothioate and phosphorodithioate aptamer libraries designed for rapid PCR-based sequencing. Nucleic Acids Res. 2002 Dec 1;30(23):e132.

    Diekman MA, Braun W, Peter D, Cook D. Seasonal serum concentrations of melatonin in cycling and noncycling mares. J Anim Sci. 2002 Nov;80(11):2949-52.

    Schein CH, Ozgun N, Izumi T, Braun W. Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases. BMC Bioinformatics. 2002 Nov 25;3:37.

    Pebay-Peyroula E, Royant A, Landau EM, Navarro J. Structural basis for sensory rhodopsin function. Biochim Biophys Acta. 2002 Oct 11;1565(2):196-205. Review.

    Neutze R, Pebay-Peyroula E, Edman K, Royant A, Navarro J, Landau EM. Bacteriorhodopsin: a high-resolution structural view of vectorial proton transport. Biochim Biophys Acta. 2002 Oct 11;1565(2):144-67. Review.

    Luxon BA, Grace M, Brassard D, Bordens R. Pegylated interferons for the treatment of chronic hepatitis C infection. Clin Ther. 2002 Sep;24(9):1363-83. Review.

    Ivanciuc O, Schein CH, Braun W. Data mining of sequences and 3D structures of allergenic proteins. Bioinformatics. 2002 Oct;18(10):1358-64.

    Rajarathnam K. Designing decoys for chemokine-chemokine receptor interaction. Curr Pharm Des. 2002;8(24):2159-69. Review.

    Price MG, Landsverk ML, Barral JM, Epstein HF. Two mammalian UNC-45 isoforms are related to distinct cytoskeletal and muscle-specific functions. J Cell Sci. 2002 Nov 1;115(Pt 21):4013-23.

    Hutagalung AH, Landsverk ML, Price MG, Epstein HF. The UCS family of myosin chaperones. J Cell Sci. 2002 Nov 1;115(Pt 21):3983-90. Review.

    Lin SH, Lee JC. Communications between the high-affinity cyclic nucleotide binding sites in E. coli cyclic AMP receptor protein: effect of single site mutations. Biochemistry. 2002 Oct 1;41(39):11857-67.

    Yang S, Yu X, VanLoock MS, Jezewska MJ, Bujalowski W, Egelman EH. Flexibility of the rings: structural asymmetry in the DnaB hexameric helicase.J Mol Biol. 2002 Aug 30;321(5):839-49.

    Li H, Linke WA, Oberhauser AF, Carrion-Vazquez M, Kerkvliet JG, Lu H, Marszalek PE, Fernandez JM. Reverse engineering of the giant muscle protein titin. Nature. 2002 Aug 29;418(6901):998-1002.

    Ji YS, Johnson BH, Webb MS, Thompson EB. Mutational analysis of DBD*--a unique antileukemic gene sequence. Neoplasia. 2002 Sep-Oct;4(5):417-23.

    Strusberg I, Sembaj A, Tabares S, Strusberg AM, del Castillo I, Villamar M, Wilkes DM, Wang C, Aristimuno PC, Castro AF, Altenberg GA. Nucleotide triphosphatase activity of the N-terminal nucleotide-binding domains of the multidrug resistance proteins P-glycoprotein and MRP1. Biochem Biophys Res Commun. 2002 Aug 16;296(2):388-94.

    Wrabl JO, Larson SA, Hilser VJ. Thermodynamic environments in proteins: fundamental determinants of fold specificity.Protein Sci. 2002 Aug;11(8):1945-57.

    King DJ, Bassett SE, Li X, Fennewald SA, Herzog NK, Luxon BA, Shope R, Gorenstein DG. Combinatorial selection and binding of phosphorothioate aptamers targeting human NF-kappa B RelA(p65) and p50. Biochemistry. 2002 Jul 30;41(30):9696-706.

    Murtazina D, Puchkaev AV, Schein CH, Oezguen N, Braun W, Nanavati A, Pikuleva IA. Membrane-protein interactions contribute to efficient 27-hydroxylation of cholesterol by mitochondrial cytochrome P450 27A1.J Biol Chem. 2002 Oct 4;277(40):37582-9.

    Galletto R, Bujalowski W. Kinetics of the E. coli replication factor DnaC protein-nucleotide interactions. II. Fluorescence anisotropy and transient, dynamic quenching stopped-flow studies of the reaction intermediates. Biochemistry. 2002 Jul 16;41(28):8921-34.

    Galletto R, Bujalowski W. The E. coli replication factor DnaC protein exists in two conformations with different nucleotide binding capabilities. I. Determination of the binding mechanism using ATP and ADP fluorescent analogues. Biochemistry. 2002 Jul 16;41(28):8907-20.

    Suetomi K, Rojo D, Navarro J. Identification of a signal transduction switch in the chemokine receptor CXCR1. J Biol Chem. 2002 Aug 30;277(35):31563-6.

    Yang X, Hodge RP, Luxon BA, Shope R, Gorenstein DG. Separation of synthetic oligonucleotide dithioates from monothiophosphate impurities by anion-exchange chromatography on a mono-q column. Anal Biochem. 2002 Jul 1;306(1):92-9.

    Oberhauser AF, Badilla-Fernandez C, Carrion-Vazquez M, Fernandez JM. The mechanical hierarchies of fibronectin observed with single-molecule AFM. J Mol Biol. 2002 May 31;319(2):433-47.

    Tian B, Zhang Y, Luxon BA, Garofalo RP, Casola A, Sinha M, Brasier AR. Identification of NF-kappaB-dependent gene networks in respiratory syncytial virus-infected cells. J Virol. 2002 Jul;76(13):6800-14.

    Dong A, Malecki JM, Lee L, Carpenter JF, Lee JC. Ligand-induced conformational and structural dynamics changes in Escherichia coli cyclic AMP receptor protein. Biochemistry. 2002 May 28;41(21):6660-7.

    Kunkel M, Watowich SJ. Conformational changes accompanying self-assembly of the hepatitis C virus core protein. Virology. 2002 Mar 15;294(2):239-45.

    Qiao J, Mei FC, Popov VL, Vergara LA, Cheng X. Cell cycle-dependent subcellular localization of exchange factor directly activated by cAMP. J Biol Chem. 2002 Jul 19;277(29):26581-6.

    Zahringer M, Kamm KF, Krug B, Braun W, Coburger S, Winnekendonk G, Kruger K, Haupt G, Lackner K. [Comparison of flat-panel radiography and computed radiography in urography] Rofo. 2002 May;174(5):625-30. German.

    Oezguen N, Adamian L, Xu Y, Rajarathnam K, Braun W. Automated assignment and 3D structure calculations using combinations of 2D homonuclear and 3D heteronuclear NOESY spectra.J Biomol NMR. 2002 Mar;22(3):249-63.

    Navarro J, Landau EM, Fahmy K. Receptor-dependent G-protein activation in lipidic cubic phase. Biopolymers. 2002;67(3):167-77.

    Royant A, Grizot S, Kahn R, Belrhali H, Fieschi F, Landau EM, Pebay-Peyroula E. Detection and characterization of merohedral twinning in two protein crystals: bacteriorhodopsin and p67(phox). Acta Crystallogr D Biol Crystallogr. 2002 May;58(Pt 5):784-91.

    Okada T, Fujiyoshi Y, Silow M, Navarro J, Landau EM, Shichida Y. Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography. Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5982-7. Epub 2002 Apr 23.

    Edman K, Royant A, Nollert P, Maxwell CA, Pebay-Peyroula E, Navarro J, Neutze R, Landau EM. Early structural rearrangements in the photocycle of an integral membrane sensory receptor. Structure. 2002 Apr;10(4):473-82.

    Miller AL, Johnson BH, Medh RD, Townsend CM, Thompson EB. Glucocorticoids and polyamine inhibitors synergize to kill human leukemic CEM cells. Neoplasia. 2002 Jan-Feb;4(1):68-81.

    Marszalek PE, Li H, Oberhauser AF, Fernandez JM. Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM. Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4278-83. Epub 2002 Mar 26.

    Jezewska MJ, Galletto R, Bujalowski W. Dynamics of gapped DNA recognition by human polymerase beta. J Biol Chem. 2002 Jun 7;277(23):20316-27.

    Lin SH, Kovac L, Chin AJ, Chin CC, Lee JC. Ability of E. coli cyclic AMP receptor protein to differentiate cyclic nucelotides: effects of single site mutations. Biochemistry. 2002 Mar 5;41(9):2946-55.

    Choudhary S, Zhang W, Zhou F, Campbell GA, Chan LL, Thompson EB, Ansari NH. Cellular lipid peroxidation end-products induce apoptosis in human lens epithelial cells. Free Radic Biol Med. 2002 Feb 15;32(4):360-9.

    Zhang S, Gorenstein DG. Coherent excitation with phase-incremented pulses. J Magn Reson. 2002 Jan;154(1):73-9.

    Barral JM, Hutagalung AH, Brinker A, Hartl FU, Epstein HF. Role of the myosin assembly protein UNC-45 as a molecular chaperone for myosin. Science. 2002 Jan 25;295(5555):669-71.

    Cawthorne CH, Rudat KR, Burton MS, Brown KE, Luxon BA, Janney CG, Fimmel CJ. Limited success of HCV antiviral therapy in United States veterans. Am J Gastroenterol. 2002 Jan;97(1):149-55.

    Mei FC, Qiao J, Tsygankova OM, Meinkoth JL, Quilliam LA, Cheng X. Differential signaling of cyclic AMP: opposing effects of exchange protein directly activated by cyclic AMP and cAMP-dependent protein kinase on protein kinase B activation. J Biol Chem. 2002 Mar 29;277(13):11497-504.

    Thiviyanathan V, Vyazovkina KV, Gozansky EK, Bichenchova E, Abramova TV, Luxon BA, Lebedev AV, Gorenstein DG. Structure of hybrid backbone methylphosphonate DNA heteroduplexes: effect of R and S stereochemistry. Biochemistry. 2002 Jan 22;41(3):827-38.

    Nollert P, Navarro J, Landau EM. Crystallization of membrane proteins in cubo. Methods Enzymol. 2002;343:183-99. Review.